a motif arrangement language
Junier, et al Swiss Institute of Bioinformatics, Switzerland 200
Junier, T; Pagni, M; Bucher, P "mmsearch: a motif arrangement language and search program" Bioinformatics 17(12) December 2001, pp1234-1235
Abstract: This paper presents a language for describing arrangements of motifs in biological sequences, and a program that uses the language to find the arrangements in motif match databases. The program does not by itself search for the constituent motifs, and is thus independent of how they are detected, which allows it to use motif match data of various origins.
- Online trial
- Source distribution
- mmsearchis documentation